date |
topic |
notes |
homework |
recommended readings |
Major Unit. Genomics Foundations: Modeling and Measuring Evolution: Linkage Disequilibrium (LD), Urn Models |
Sept. 4 |
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Sept. 9 |
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Sept. 11 |
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Major Unit. Genome-Wide Association Studies (GWAS): Statistical associations, the missing heritabililty problem, genetic heterogeneity, genomic privacy. |
Sept. 16 |
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Sept. 18 |
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Sept. 23 |
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Major Unit. The Social Network of Protein Folds: Individual Preferences of Amino Acids and the Thermodynamic "Social Choice" Hypothesis |
Sept. 25 |
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Sept. 30 |
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Oct. 2 |
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Major Unit. Algorithms: Maximum Likelihood and Expectation-Maximization Algorithms: Inferring haplotype frequencies in populations. |
Oct. 7 |
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Oct. 9 |
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Oct. 14 |
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Major Unit. Algorithms: Set-cover and Minimum Informative Subset Algorithms: Tagging SNPs selection, LD. |
Oct. 16 |
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Oct. 21 |
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Oct. 23 |
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Major Unit. Algorithms: Graph-Theory Algorithms: Haplotype Phasing, Haplotype Assembly, Identical-by-Descent Inference
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Oct. 28 |
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Oct. 30 |
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Nov. 4 |
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Major Unit. Algorithms: Markov Chain Monte Carlo Algorithms: Population Substructure |
Nov. 6 |
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Nov. 11 |
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Nov. 13 |
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Major Unit. Algorithms: Statistical Hypothesis Testing and Knapsack Algorithms: The Neyman-Pearson Lemma, Multiple Testing |
Nov. 18 |
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Nov. 20 |
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Nov. 25 |
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Major Unit. Algorithms: Voting Theory Algorithms and von Neumann-Morgenstern Utility Theory: Protein Folding Energy Function Inference |
Nov. 27 |
NO CLASS |
NO CLASS |
NO CLASS |
NO CLASS |
Dec. 2 |
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Dec. 4 |
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Dec. 9 |
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